DRTF - The Database of Rice Transcription Factor
HOME PlantTFDB blast advance search help ID (eg. LOC_Os03g08470)

 
News: The new version of rice transcription factor databases are online at PlantTFDB3.0.
You can access the database for Japonica (MSU 7.0, here) and Indica (RIS-glean, here). (2013-7-24)
 

The Database of Rice Transcription Factors (DRTF) is a collection of known and predicted transcription factors of Oryza sativa L. ssp. indica and Oryza sativa L. ssp. japonica. DRTF currently contains 2,025 putative transcription factors (TF) gene models in indica and 2,384 in japonica, distributed in 63 families. Details on how the transcription factors are collected can be found in the Help page.

Reference:
Gao, G., Zhong, Y., Guo, A., Zhu, Q., Tang, W., Zheng, W., Gu, X., Wei, L. and Luo, J. (2006) DRTF: a database of rice transcription factors. Bioinformatics 2006, 22(10):1286-7.

See Also:
PlantTFDB: Plant Transcription Factor Database (v3.0)

 
Browse by Family
(In parentheses is the number of putative TF Gene Models in indica/japonica)
ABI3/VP1(54/57)Alfin(10/13)AP2/EREBP(174/182)ARF(24/41)ARID(6/7)
AS2(43/39)AUX/IAA(30/46)BBR/BPC(4/7)BES1(7/6)bHLH(157/184)
bZIP(88/109)C2C2-CO-like(34/54)C2C2-Dof(28/36)C2C2-GATA(28/23)C2C2-YABBY(7/12)
C2H2(94/113)C3H(57/90)CAMTA(7/8)CCAAT-Dr1(1/1)CCAAT-HAP2(10/20)
CCAAT-HAP3(12/17)CCAAT-HAP5(14/18)CPP(11/16)E2F/DP(9/9)EIL(9/12)
FHA(15/19)GARP-ARR-B(9/10)GARP-G2-like(49/56)GeBP(12/15)GIF(3/3)
GRAS(57/58)GRF(12/18)HB(84/103)HMG(12/19)HRT-like(1/1)
HSF(27/36)JUMONJI(17/17)LFY(2/1)LIM(10/13)LUG(6/11)
MADS(70/83)MBF1(4/3)MYB(136/138)MYB-related(64/84)NAC(157/149)
Nin-like(12/14)NZZ(1/1)PBF-2-like(Whirly)(2/1)PcG(34/34)PHD(61/79)
PLATZ(15/20)S1Fa-like(3/4)SBP(18/28)SRS(5/6)TAZ(4/10)
TCP(22/24)Trihelix(22/23)TUB(13/21)ULT(2/2)VOZ(2/2)
WRKY(111/113)ZF-HD(14/15)ZIM(19/29)  
 
Browse by Chromosome
(In parentheses is the number of putative TF Gene Models in indica/japonica)
indica
Chr01(309)Chr02(216)Chr03(277)Chr04(172)Chr05(169)
Chr06(173)Chr07(133)Chr08(157)Chr09(119)Chr10(77)
Chr11(97)Chr12(124)ChUn(19)  
japonica
Chr01(372)Chr02(268)Chr03(324)Chr04(181)Chr05(200)
Chr06(202)Chr07(173)Chr08(180)Chr09(142)Chr10(92)
Chr11(112)Chr12(138)   

© Center for Bioinformatics(CBI), Peking University
2006
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